PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0068s0008.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HB-other
Protein Properties Length: 294aa    MW: 32510.2 Da    PI: 8.6532
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0068s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.5e-172073457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          R++ ++ ql  Le+ +++++yps + r+eL+kk+gL+e+q +vWF  rR k+++
  Sphfalx0068s0008.1.p 20 RRKKSPLQLGLLEKTYAEDKYPSDAVRAELSKKIGLSEKQLRVWFTHRRHKDRR 73
                          788899**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-15573IPR009057Homeodomain-like
PROSITE profilePS5007116.2611474IPR001356Homeobox domain
SMARTSM003892.4E-161678IPR001356Homeobox domain
PfamPF000461.8E-142073IPR001356Homeobox domain
CDDcd000861.40E-162073No hitNo description
Gene3DG3DSA:1.10.10.601.8E-162073IPR009057Homeodomain-like
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MASNDSSPVQ SPENQKGVVR RKKSPLQLGL LEKTYAEDKY PSDAVRAELS KKIGLSEKQL  60
RVWFTHRRHK DRRDGIDDDK LTLHGNRIKA DTDSDELPST KRGEIDLNSR EDDRSEDGYP  120
AAVLAEEQDD DVLIVKKMNG VNVDDSSYEE IEKPKATTKR KSASSLKESK KPPRNPSSPK  180
SKSISKPESF ELAAIRAVES QLNGPLREDG PPLGFEFDSP PPGAFEELTS AEVPYVANVR  240
NDNGYQSLSG RAALEGKWGK DSVLLEKKKR KVGDLYSARL PAGQSVYRGG FQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16673RRHKDRRD
2266271KKKRKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.14e-26homeobox-1